Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs7109085 | chr11:134406309 | C/T | 3.69E-8 | 113 | 42.25 | 38.83 | 15.08 | KM Plot |
THYM | rs71156436 | chr16:24788422 | AGCAGCCACAGCC/A | 4.16E-5 | 113 | 46.43 | 27.33 | 50.1 | KM Plot |
THYM | rs71391580 | chr16:24842818 | C/G | 5.85E-5 | 110 | 48 | 27.57 | 50.1 | KM Plot |
THYM | rs7186308 | chr16:24848471 | A/G | 5.57E-5 | 110 | 46.27 | 31.18 | 50.1 | KM Plot |
THYM | rs7204288 | chr16:24784531 | A/G | 4.28E-5 | 113 | 46.6 | 30.03 | 50.1 | KM Plot |
THYM | rs7309984 | chr12:26771916 | G/A | 0 | 108 | 42.82 | 35.67 | 0.13 | KM Plot |
THYM | rs73551577 | chr16:24845143 | G/A | 5.68E-5 | 111 | 48 | 28.8 | 50.1 | KM Plot |
THYM | rs73947808 | chr2:73721250 | A/C | 5.94E-5 | 112 | 37.13 | 48 | 32.7 | KM Plot |
THYM | rs7398 | chr7:76135134 | G/A | 2.57E-5 | 112 | 38.33 | 46.23 | 25.83 | KM Plot |
THYM | rs743239 | chr2:33002611 | T/C | 8.29E-13 | 113 | 46.43 | 26.57 | 0.9 | KM Plot |
THYM | rs7461058 | chr8:82696813 | A/G | 6.7E-5 | 113 | 22.5 | 37.27 | 42.25 | KM Plot |
THYM | rs74844437 | chr8:82758413 | A/G | 4.45E-5 | 113 | 42.82 | 35.77 | 22.5 | KM Plot |
THYM | rs7564890 | chr2:73641853 | T/C | 3.55E-5 | 113 | 38.13 | 46.07 | 11.87 | KM Plot |
THYM | rs7566016 | chr2:33005632 | G/A | 8.29E-13 | 113 | 46.43 | 26.57 | 0.9 | KM Plot |
THYM | rs75683636 | chr6:51561973 | G/A | 0 | 108 | 40.67 | 43.77 | 0.13 | KM Plot |